Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs150223044 chr5:1595388 TTTAAA/T 2.25E-7 490 31.27 36.9 21.97 KM Plot
THCA rs150284987 chr3:122555347 C/A 1.32E-7 499 32.03 23.7 18.38 KM Plot
THCA rs150303838 chr10:81635391 T/G 2.57E-7 487 31.8 31.23 17.8 KM Plot
THCA rs150688308 chr1:152911018 A/G 0.000139 500 31.43 34.43 37.7 KM Plot
THCA rs150742735 chr10:81613249 G/A 4.76E-10 486 31.73 30.53 14.52 KM Plot
THCA rs150879403 chr3:53937264 C/T 2.69E-6 502 31.67 31.4 24.75 KM Plot
THCA rs1511570 chr3:139260828 A/G 4.06E-10 503 31.47 33.97 19.32 KM Plot
THCA rs1511571 chr3:139260792 T/C 4.25E-10 503 31.47 33.8 19.32 KM Plot
THCA rs151290291 chr4:95020546 G/A 0.000117 502 31.47 31.53 31.92 KM Plot
THCA rs1515950 chr2:87020817 C/T 6.5E-8 503 32.35 28.73 32.1 KM Plot
THCA rs1525814 chr7:64255450 A/T 9.74E-5 501 31.47 32.9 31.27 KM Plot
THCA rs1528439 chr2:181462035 C/T 0.000126 503 31.72 31.47 31 KM Plot
THCA rs1536192 chr13:50120985 A/G 1.69E-5 503 34.52 30.37 31.75 KM Plot
THCA rs1546854 chr6:166796433 C/A 1.46E-5 491 31.53 32.1 31.43 KM Plot
THCA rs1550927 chr3:59655767 A/G 0.000146 503 31.47 31.68 32.1 KM Plot